IGA Publications

• Automated FingerPrint Background removal: FPB.
  Simone Scalabrin, Alberto Policriti, Michele Morgante
  http://www.ncbi.nlm.nih.gov/pubmed/19405935...
• GAM: Genomic Assemblies Merger. A Graph Based Method to Integrate Different Assemblies
  Alberto Casagrande, Cristian Del Fabbro, Simone Scalabrin, Alberto Policriti
  Proceedings of the Third IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2009), Washington D.C., Nov 1-4
  In publication.
• Discrete Semantics for Hybrid Automata
  Alberto Casagrande, Carla Piazza, Alberto Policriti
  Discrete Event Dynamic Systems.
  In publication.
  http://dx.doi.org/10.1007/s10626-009-0082-7
• Inclusion dynamics hybrid automata
  Alberto Casagrande, Carla Piazza, Alberto Policriti, Bud Mishra
  Information and Computation, Volume 206, Issue 12, December 2008, Pages 1394-1424
  http://dx.doi.org/10.1016/j.ic.2008.09.001
• Annotating genomes with massive-scale RNA-sequencing Denoeud F, Aury JM, Da Silva C, Noel B, Rogier O, Delledonne M, Morgante M, Valle G, Wincker P, Scarpelli S, Jaillon O, Artiguenave F.
  Genome Biology 2008, 9: R175
• A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping
  Cipriani G, Marrazzo MT, Di Gaspero G, Pfeiffer A, Morgante M, Testolin R.
  BMC Plant Biology 2008, 8: 127
• Resistance to Erysiphe necator in the grapevine 'Kishmish vatkana' is controlled by a single locus through restriction of hyphal growth
  Hoffmann S, Di Gaspero G, Kovács L, Howard S, Kiss E, Galbács Z, Testolin R, Kozma P.
  Theor Appl Genet. 2008 116(3): 427-438
• Control of Steric Hindrance on Restriction Enzyme Reactions with Surface-Bound DNA Nanostructures
  Castronovo M, Radovic S, Grunwald C, Casalis L, Morgante M, Scoles G.
  Nano Lett. 2008 Nov 4
• Characterization and expression profiling of mature and precursor microRNAs in the grapevine Vitis vinifera
  Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, David S. Horner.
  Plant Cell, submitted.
• A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance
  M. Moroldo, S. Paillard, R. Marconi, L. Fabrice, A. Canaguier, C. Cruaud, V. De Berardinis, C. Guichard, V. Brunaud, I. Le Clainche, S. Scalabrin, R. Testolin, G. Di Gaspero, M. Morgante, and A.F. Adam-Blondon
  BMC Plant Biology, http://dx.doi.org/10.1186/1471-2229-8-66, Vol. 8, no. 66, June 2008
• The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
  Olivier Jaillon*, Jean-Marc Aury*, Benjamin Noel, Alberto Policriti, Christian Clepet, Alberto Casagrande, Nathalie Choisne, Se´bastien Aubourg, Nicola Vitulo, Claire Jubin, Alessandro Vezzi, Fabrice Legeai, Philippe Hugueney, Corinne Dasilva, David Horner, Erica Mica, Delphine Jublot, Julie Poulain, Clémence Bruyère, Alain Billault, Béatrice Segurens, Michel Gouyvenoux, Edgardo Ugarte, Federica Cattonaro, Véronique Anthouard, Virginie Vico, Cristian Del Fabbro, Michaël Alaux, Gabriele Di Gaspero, Vincent Dumas, Nicoletta Felice, Sophie Paillard, Irena Juman, Marco Moroldo, Simone Scalabrin, Aurélie Canaguier, Isabelle Le Clainche, Giorgio Malacrida, Eláonore Durand, Graziano Pesole, Valérie Laucou, Philippe Chatelet, Didier Merdinoglu, Massimo Delledonne, Mario Pezzotti, Alain Lecharny, Claude Scarpelli, François Artiguenave, M. Enrico Pè, Giorgio Valle, Michele Morgante, Michel Caboche, Anne-Françoise Adam-Blondon, Jean Weissenbach, Francis Quétier, Patrick Wincker
  Nature Online, http://dx.doi.org/10.1038/nature06148, August 2007
• Wnt-mediated downregulation of Sp1 target genes by a transcriptional repressor Sp5
  N. Fujimura, T. Vacik, O. Machon, C. Vlcek, S. Scalabrin, M. Speth, D. Diep, S. Krauss, and Z. Kozmik
  The Journal of biological chemistry, Vol. 282, no. 2, January 2007
• Structured Motifs Search
  M. Morgante, A. Policriti, N. Vitacolonna, and A. Zuccolo
  Journal of Computational Biology, Vol. 12, no. 8, October 2005
• Mapping and sequencing complex genomes: Let's get physical!
  B. Meyers, S. Scalabrin, and M. Morgante
  Nature Review Genetics, Vol. 5, no. 8, August 2004
• Taming the complexity of biochemical models through bisimulation and collapsing: Theory and practice
  M. Antoniotti, B. Mishra, C. Piazza, A. Policriti, and M. Simeoni.
  Theoretical Computer Science, 2004.